PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G057200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 493aa    MW: 55349.1 Da    PI: 5.6238
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G057200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.2e-35231132101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+y++++d++++e++sws+n+nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF++++F k++k
  Manes.15G057200.1.p  23 FLLKTYDMVDDSSTDEIVSWSSNENSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFVKDQK 103
                          9****************************************************************999.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll++i+r+k
  Manes.15G057200.1.p 104 HLLKNIHRRK 113
                          ********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.3E-3819112IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.28E-3619112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-6019112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-192346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.9E-3123112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-196173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-197486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MEVAPNSASS AVASGGGGGP APFLLKTYDM VDDSSTDEIV SWSSNENSFV VWNPPEFARL  60
LLPTYFKHNN FSSFIRQLNT YGFRKIDPER WEFANEEFVK DQKHLLKNIH RRKPIHSHSH  120
PQGSLGDPER AALEEEIDRL SREKASLEAS VLGSKQQRSA EKLQLEDLTH RVDSMEQRQE  180
RLLTCLEKAV QNPNFIEHLA QKLDSMDFSA YNKKRRLPQV DHSKSIVENS FVDNQSFSRP  240
EVGNVIRQDF SNKLRLELSP AVSDINLVSK STQSSNEDGG SPQRKISEGD PKDAPPRTSC  300
LLFPAETFEL SDTGTSYPYK VDPPFTRKVT VNETPGLHLL QQNFTSNEEV DGHISCHLNL  360
TLASSPLQVN RNPYPARMTQ LHQEICRSPE SQFNGNGKES DTMATSKDRN AGDGDTTLSP  420
TKEAPNSSQG PAAVPARVND VFWEQFLTER PGSFDNEEAS SNYRANPYEE QEDRKSSHGV  480
VRNVKNMEHL YL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-211611219129Heat shock factor protein 1
5d5v_B1e-211611219129Heat shock factor protein 1
5d5v_D1e-211611219129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071084.10.0PREDICTED: heat stress transcription factor A-5
SwissprotQ94BZ51e-178HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A067L5F40.0A0A067L5F4_JATCU; Uncharacterized protein
STRINGPOPTR_0017s08630.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-179HSF family protein